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Hypothesis testing involves formulating assumptions about population parameters based on sample statistics and rigorously evaluating these assumptions against empirical evidence. This article sheds light on the significance of hypothesis testing and the critical steps involved in the process.
A hypothesis is an assumption or idea, specifically a statistical claim about an unknown population parameter. For example, a judge assumes a person is innocent and verifies this by reviewing evidence and hearing testimony before reaching a verdict.
Hypothesis testing is a statistical method that is used to make a statistical decision using experimental data. Hypothesis testing is basically an assumption that we make about a population parameter. It evaluates two mutually exclusive statements about a population to determine which statement is best supported by the sample data.
To test the validity of the claim or assumption about the population parameter:
Example: You say an average height in the class is 30 or a boy is taller than a girl. All of these is an assumption that we are assuming, and we need some statistical way to prove these. We need some mathematical conclusion whatever we are assuming is true.
Hypothesis testing is an important procedure in statistics. Hypothesis testing evaluates two mutually exclusive population statements to determine which statement is most supported by sample data. When we say that the findings are statistically significant, thanks to hypothesis testing.
One tailed test focuses on one direction, either greater than or less than a specified value. We use a one-tailed test when there is a clear directional expectation based on prior knowledge or theory. The critical region is located on only one side of the distribution curve. If the sample falls into this critical region, the null hypothesis is rejected in favor of the alternative hypothesis.
There are two types of one-tailed test:
A two-tailed test considers both directions, greater than and less than a specified value.We use a two-tailed test when there is no specific directional expectation, and want to detect any significant difference.
Example: H 0 : [Tex]\mu = [/Tex] 50 and H 1 : [Tex]\mu \neq 50 [/Tex]
To delve deeper into differences into both types of test: Refer to link
In hypothesis testing, Type I and Type II errors are two possible errors that researchers can make when drawing conclusions about a population based on a sample of data. These errors are associated with the decisions made regarding the null hypothesis and the alternative hypothesis.
Null Hypothesis is True | Null Hypothesis is False | |
---|---|---|
Null Hypothesis is True (Accept) | Correct Decision | Type II Error (False Negative) |
Alternative Hypothesis is True (Reject) | Type I Error (False Positive) | Correct Decision |
Step 1: define null and alternative hypothesis.
State the null hypothesis ( [Tex]H_0 [/Tex] ), representing no effect, and the alternative hypothesis ( [Tex]H_1 [/Tex] ), suggesting an effect or difference.
We first identify the problem about which we want to make an assumption keeping in mind that our assumption should be contradictory to one another, assuming Normally distributed data.
Select a significance level ( [Tex]\alpha [/Tex] ), typically 0.05, to determine the threshold for rejecting the null hypothesis. It provides validity to our hypothesis test, ensuring that we have sufficient data to back up our claims. Usually, we determine our significance level beforehand of the test. The p-value is the criterion used to calculate our significance value.
Gather relevant data through observation or experimentation. Analyze the data using appropriate statistical methods to obtain a test statistic.
The data for the tests are evaluated in this step we look for various scores based on the characteristics of data. The choice of the test statistic depends on the type of hypothesis test being conducted.
There are various hypothesis tests, each appropriate for various goal to calculate our test. This could be a Z-test , Chi-square , T-test , and so on.
We have a smaller dataset, So, T-test is more appropriate to test our hypothesis.
T-statistic is a measure of the difference between the means of two groups relative to the variability within each group. It is calculated as the difference between the sample means divided by the standard error of the difference. It is also known as the t-value or t-score.
In this stage, we decide where we should accept the null hypothesis or reject the null hypothesis. There are two ways to decide where we should accept or reject the null hypothesis.
Comparing the test statistic and tabulated critical value we have,
Note: Critical values are predetermined threshold values that are used to make a decision in hypothesis testing. To determine critical values for hypothesis testing, we typically refer to a statistical distribution table , such as the normal distribution or t-distribution tables based on.
We can also come to an conclusion using the p-value,
Note : The p-value is the probability of obtaining a test statistic as extreme as, or more extreme than, the one observed in the sample, assuming the null hypothesis is true. To determine p-value for hypothesis testing, we typically refer to a statistical distribution table , such as the normal distribution or t-distribution tables based on.
At last, we can conclude our experiment using method A or B.
To validate our hypothesis about a population parameter we use statistical functions . We use the z-score, p-value, and level of significance(alpha) to make evidence for our hypothesis for normally distributed data .
When population means and standard deviations are known.
[Tex]z = \frac{\bar{x} – \mu}{\frac{\sigma}{\sqrt{n}}}[/Tex]
T test is used when n<30,
t-statistic calculation is given by:
[Tex]t=\frac{x̄-μ}{s/\sqrt{n}} [/Tex]
Chi-Square Test for Independence categorical Data (Non-normally distributed) using:
[Tex]\chi^2 = \sum \frac{(O_{ij} – E_{ij})^2}{E_{ij}}[/Tex]
Let’s examine hypothesis testing using two real life situations,
Imagine a pharmaceutical company has developed a new drug that they believe can effectively lower blood pressure in patients with hypertension. Before bringing the drug to market, they need to conduct a study to assess its impact on blood pressure.
Let’s consider the Significance level at 0.05, indicating rejection of the null hypothesis.
If the evidence suggests less than a 5% chance of observing the results due to random variation.
Using paired T-test analyze the data to obtain a test statistic and a p-value.
The test statistic (e.g., T-statistic) is calculated based on the differences between blood pressure measurements before and after treatment.
t = m/(s/√n)
then, m= -3.9, s= 1.8 and n= 10
we, calculate the , T-statistic = -9 based on the formula for paired t test
The calculated t-statistic is -9 and degrees of freedom df = 9, you can find the p-value using statistical software or a t-distribution table.
thus, p-value = 8.538051223166285e-06
Step 5: Result
Conclusion: Since the p-value (8.538051223166285e-06) is less than the significance level (0.05), the researchers reject the null hypothesis. There is statistically significant evidence that the average blood pressure before and after treatment with the new drug is different.
Let’s create hypothesis testing with python, where we are testing whether a new drug affects blood pressure. For this example, we will use a paired T-test. We’ll use the scipy.stats library for the T-test.
Scipy is a mathematical library in Python that is mostly used for mathematical equations and computations.
We will implement our first real life problem via python,
import numpy as np from scipy import stats # Data before_treatment = np . array ([ 120 , 122 , 118 , 130 , 125 , 128 , 115 , 121 , 123 , 119 ]) after_treatment = np . array ([ 115 , 120 , 112 , 128 , 122 , 125 , 110 , 117 , 119 , 114 ]) # Step 1: Null and Alternate Hypotheses # Null Hypothesis: The new drug has no effect on blood pressure. # Alternate Hypothesis: The new drug has an effect on blood pressure. null_hypothesis = "The new drug has no effect on blood pressure." alternate_hypothesis = "The new drug has an effect on blood pressure." # Step 2: Significance Level alpha = 0.05 # Step 3: Paired T-test t_statistic , p_value = stats . ttest_rel ( after_treatment , before_treatment ) # Step 4: Calculate T-statistic manually m = np . mean ( after_treatment - before_treatment ) s = np . std ( after_treatment - before_treatment , ddof = 1 ) # using ddof=1 for sample standard deviation n = len ( before_treatment ) t_statistic_manual = m / ( s / np . sqrt ( n )) # Step 5: Decision if p_value <= alpha : decision = "Reject" else : decision = "Fail to reject" # Conclusion if decision == "Reject" : conclusion = "There is statistically significant evidence that the average blood pressure before and after treatment with the new drug is different." else : conclusion = "There is insufficient evidence to claim a significant difference in average blood pressure before and after treatment with the new drug." # Display results print ( "T-statistic (from scipy):" , t_statistic ) print ( "P-value (from scipy):" , p_value ) print ( "T-statistic (calculated manually):" , t_statistic_manual ) print ( f "Decision: { decision } the null hypothesis at alpha= { alpha } ." ) print ( "Conclusion:" , conclusion )
T-statistic (from scipy): -9.0 P-value (from scipy): 8.538051223166285e-06 T-statistic (calculated manually): -9.0 Decision: Reject the null hypothesis at alpha=0.05. Conclusion: There is statistically significant evidence that the average blood pressure before and after treatment with the new drug is different.
In the above example, given the T-statistic of approximately -9 and an extremely small p-value, the results indicate a strong case to reject the null hypothesis at a significance level of 0.05.
Data: A sample of 25 individuals is taken, and their cholesterol levels are measured.
Cholesterol Levels (mg/dL): 205, 198, 210, 190, 215, 205, 200, 192, 198, 205, 198, 202, 208, 200, 205, 198, 205, 210, 192, 205, 198, 205, 210, 192, 205.
Populations Mean = 200
Population Standard Deviation (σ): 5 mg/dL(given for this problem)
As the direction of deviation is not given , we assume a two-tailed test, and based on a normal distribution table, the critical values for a significance level of 0.05 (two-tailed) can be calculated through the z-table and are approximately -1.96 and 1.96.
The test statistic is calculated by using the z formula Z = [Tex](203.8 – 200) / (5 \div \sqrt{25}) [/Tex] and we get accordingly , Z =2.039999999999992.
Step 4: Result
Since the absolute value of the test statistic (2.04) is greater than the critical value (1.96), we reject the null hypothesis. And conclude that, there is statistically significant evidence that the average cholesterol level in the population is different from 200 mg/dL
import scipy.stats as stats import math import numpy as np # Given data sample_data = np . array ( [ 205 , 198 , 210 , 190 , 215 , 205 , 200 , 192 , 198 , 205 , 198 , 202 , 208 , 200 , 205 , 198 , 205 , 210 , 192 , 205 , 198 , 205 , 210 , 192 , 205 ]) population_std_dev = 5 population_mean = 200 sample_size = len ( sample_data ) # Step 1: Define the Hypotheses # Null Hypothesis (H0): The average cholesterol level in a population is 200 mg/dL. # Alternate Hypothesis (H1): The average cholesterol level in a population is different from 200 mg/dL. # Step 2: Define the Significance Level alpha = 0.05 # Two-tailed test # Critical values for a significance level of 0.05 (two-tailed) critical_value_left = stats . norm . ppf ( alpha / 2 ) critical_value_right = - critical_value_left # Step 3: Compute the test statistic sample_mean = sample_data . mean () z_score = ( sample_mean - population_mean ) / \ ( population_std_dev / math . sqrt ( sample_size )) # Step 4: Result # Check if the absolute value of the test statistic is greater than the critical values if abs ( z_score ) > max ( abs ( critical_value_left ), abs ( critical_value_right )): print ( "Reject the null hypothesis." ) print ( "There is statistically significant evidence that the average cholesterol level in the population is different from 200 mg/dL." ) else : print ( "Fail to reject the null hypothesis." ) print ( "There is not enough evidence to conclude that the average cholesterol level in the population is different from 200 mg/dL." )
Reject the null hypothesis. There is statistically significant evidence that the average cholesterol level in the population is different from 200 mg/dL.
Hypothesis testing stands as a cornerstone in statistical analysis, enabling data scientists to navigate uncertainties and draw credible inferences from sample data. By systematically defining null and alternative hypotheses, choosing significance levels, and leveraging statistical tests, researchers can assess the validity of their assumptions. The article also elucidates the critical distinction between Type I and Type II errors, providing a comprehensive understanding of the nuanced decision-making process inherent in hypothesis testing. The real-life example of testing a new drug’s effect on blood pressure using a paired T-test showcases the practical application of these principles, underscoring the importance of statistical rigor in data-driven decision-making.
1. what are the 3 types of hypothesis test.
There are three types of hypothesis tests: right-tailed, left-tailed, and two-tailed. Right-tailed tests assess if a parameter is greater, left-tailed if lesser. Two-tailed tests check for non-directional differences, greater or lesser.
Null Hypothesis ( [Tex]H_o [/Tex] ): No effect or difference exists. Alternative Hypothesis ( [Tex]H_1 [/Tex] ): An effect or difference exists. Significance Level ( [Tex]\alpha [/Tex] ): Risk of rejecting null hypothesis when it’s true (Type I error). Test Statistic: Numerical value representing observed evidence against null hypothesis.
Statistical method to evaluate the performance and validity of machine learning models. Tests specific hypotheses about model behavior, like whether features influence predictions or if a model generalizes well to unseen data.
Pytest purposes general testing framework for Python code while Hypothesis is a Property-based testing framework for Python, focusing on generating test cases based on specified properties of the code.
Similar reads.
When interpreting research findings, researchers need to assess whether these findings may have occurred by chance. Hypothesis testing is a systematic procedure for deciding whether the results of a research study support a particular theory which applies to a population.
Hypothesis testing uses sample data to evaluate a hypothesis about a population . A hypothesis test assesses how unusual the result is, whether it is reasonable chance variation or whether the result is too extreme to be considered chance variation.
Effect size and statistical significance.
To carry out statistical hypothesis testing, research and null hypothesis are employed:
H A: There is a relationship between intelligence and academic results.
H A: First year university students obtain higher grades after an intensive Statistics course.
H A; Males and females differ in their levels of stress.
H o : There is no relationship between intelligence and academic results.
H o: First year university students do not obtain higher grades after an intensive Statistics course.
H o : Males and females will not differ in their levels of stress.
The purpose of hypothesis testing is to test whether the null hypothesis (there is no difference, no effect) can be rejected or approved. If the null hypothesis is rejected, then the research hypothesis can be accepted. If the null hypothesis is accepted, then the research hypothesis is rejected.
In hypothesis testing, a value is set to assess whether the null hypothesis is accepted or rejected and whether the result is statistically significant:
The probability value, or p value , is the probability of an outcome or research result given the hypothesis. Usually, the probability value is set at 0.05: the null hypothesis will be rejected if the probability value of the statistical test is less than 0.05. There are two types of errors associated to hypothesis testing:
These situations are known as Type I and Type II errors:
These errors cannot be eliminated; they can be minimised, but minimising one type of error will increase the probability of committing the other type.
The probability of making a Type I error depends on the criterion that is used to accept or reject the null hypothesis: the p value or alpha level . The alpha is set by the researcher, usually at .05, and is the chance the researcher is willing to take and still claim the significance of the statistical test.). Choosing a smaller alpha level will decrease the likelihood of committing Type I error.
For example, p<0.05 indicates that there are 5 chances in 100 that the difference observed was really due to sampling error – that 5% of the time a Type I error will occur or that there is a 5% chance that the opposite of the null hypothesis is actually true.
With a p<0.01, there will be 1 chance in 100 that the difference observed was really due to sampling error – 1% of the time a Type I error will occur.
The p level is specified before analysing the data. If the data analysis results in a probability value below the α (alpha) level, then the null hypothesis is rejected; if it is not, then the null hypothesis is not rejected.
When the null hypothesis is rejected, the effect is said to be statistically significant. However, statistical significance does not mean that the effect is important.
A result can be statistically significant, but the effect size may be small. Finding that an effect is significant does not provide information about how large or important the effect is. In fact, a small effect can be statistically significant if the sample size is large enough.
Information about the effect size, or magnitude of the result, is given by the statistical test. For example, the strength of the correlation between two variables is given by the coefficient of correlation, which varies from 0 to 1.
The hypothesis testing process can be divided into five steps:
This example illustrates how these five steps can be applied to text a hypothesis:
Step 1 : There are two populations of interest.
Population 1: People who go through the experimental procedure (drink coffee).
Population 2: People who do not go through the experimental procedure (drink water).
Step 2 : We know that the characteristics of the comparison distribution (student population) are:
Population M = 19, Population SD= 4, normally distributed. These are the mean and standard deviation of the distribution of scores on the memory test for the general student population.
Step 3 : For a two-tailed test (the direction of the effect is not specified) at the 5% level (25% at each tail), the cut off sample scores are +1.96 and -1.99.
Step 4 : Your sample score of 27 needs to be converted into a Z value. To calculate Z = (27-19)/4= 2 ( check the Converting into Z scores section if you need to review how to do this process)
Step 5 : A ‘Z’ score of 2 is more extreme than the cut off Z of +1.96 (see figure above). The result is significant and, thus, the null hypothesis is rejected.
You can find more examples here:
Correlation analysis, multiple regression.
Correlation analysis explores the association between variables . The purpose of correlational analysis is to discover whether there is a relationship between variables, which is unlikely to occur by sampling error. The null hypothesis is that there is no relationship between the two variables. Correlation analysis provides information about:
A positive correlation indicates that high scores on one variable are associated with high scores on the other variable; low scores on one variable are associated with low scores on the second variable . For instance, in the figure below, higher scores on negative affect are associated with higher scores on perceived stress
A negative correlation indicates that high scores on one variable are associated with low scores on the other variable. The graph shows that a person who scores high on perceived stress will probably score low on mastery. The slope of the graph is downwards- as it moves to the right. In the figure below, higher scores on mastery are associated with lower scores on perceived stress.
Fig 2. Negative correlation between two variables. Adapted from Pallant, J. (2013). SPSS survival manual: A step by step guide to data analysis using IBM SPSS (5th ed.). Sydney, Melbourne, Auckland, London: Allen & Unwin
2. The strength or magnitude of the relationship
The strength of a linear relationship between two variables is measured by a statistic known as the correlation coefficient , which varies from 0 to -1, and from 0 to +1. There are several correlation coefficients; the most widely used are Pearson’s r and Spearman’s rho. The strength of the relationship is interpreted as follows:
It is important to note that correlation analysis does not imply causality. Correlation is used to explore the association between variables, however, it does not indicate that one variable causes the other. The correlation between two variables could be due to the fact that a third variable is affecting the two variables.
Multiple regression is an extension of correlation analysis. Multiple regression is used to explore the relationship between one dependent variable and a number of independent variables or predictors . The purpose of a multiple regression model is to predict values of a dependent variable based on the values of the independent variables or predictors. For example, a researcher may be interested in predicting students’ academic success (e.g. grades) based on a number of predictors, for example, hours spent studying, satisfaction with studies, relationships with peers and lecturers.
A multiple regression model can be conducted using statistical software (e.g. SPSS). The software will test the significance of the model (i.e. does the model significantly predicts scores on the dependent variable using the independent variables introduced in the model?), how much of the variance in the dependent variable is explained by the model, and the individual contribution of each independent variable.
Example of multiple regression model
From Dunn et al. (2014). Influence of academic self-regulation, critical thinking, and age on online graduate students' academic help-seeking.
In this model, help-seeking is the dependent variable; there are three independent variables or predictors. The coefficients show the direction (positive or negative) and magnitude of the relationship between each predictor and the dependent variable. The model was statistically significant and predicted 13.5% of the variance in help-seeking.
t-Tests are employed to compare the mean score on some continuous variable for two groups . The null hypothesis to be tested is there are no differences between the two groups (e.g. anxiety scores for males and females are not different).
If the significance value of the t-test is equal or less than .05, there is a significant difference in the mean scores on the variable of interest for each of the two groups. If the value is above .05, there is no significant difference between the groups.
t-Tests can be employed to compare the mean scores of two different groups (independent-samples t-test ) or to compare the same group of people on two different occasions ( paired-samples t-test) .
In addition to assessing whether the difference between the two groups is statistically significant, it is important to consider the effect size or magnitude of the difference between the groups. The effect size is given by partial eta squared (proportion of variance of the dependent variable that is explained by the independent variable) and Cohen’s d (difference between groups in terms of standard deviation units).
In this example, an independent samples t-test was conducted to assess whether males and females differ in their perceived anxiety levels. The significance of the test is .004. Since this value is less than .05, we can conclude that there is a statistically significant difference between males and females in their perceived anxiety levels.
Whilst t-tests compare the mean score on one variable for two groups, analysis of variance is used to test more than two groups . Following the previous example, analysis of variance would be employed to test whether there are differences in anxiety scores for students from different disciplines.
Analysis of variance compare the variance (variability in scores) between the different groups (believed to be due to the independent variable) with the variability within each group (believed to be due to chance). An F ratio is calculated; a large F ratio indicates that there is more variability between the groups (caused by the independent variable) than there is within each group (error term). A significant F test indicates that we can reject the null hypothesis; i.e. that there is no difference between the groups.
Again, effect size statistics such as Cohen’s d and eta squared are employed to assess the magnitude of the differences between groups.
In this example, we examined differences in perceived anxiety between students from different disciplines. The results of the Anova Test show that the significance level is .005. Since this value is below .05, we can conclude that there are statistically significant differences between students from different disciplines in their perceived anxiety levels.
Chi-square test for independence is used to explore the relationship between two categorical variables. Each variable can have two or more categories.
For example, a researcher can use a Chi-square test for independence to assess the relationship between study disciplines (e.g. Psychology, Business, Education,…) and help-seeking behaviour (Yes/No). The test compares the observed frequencies of cases with the values that would be expected if there was no association between the two variables of interest. A statistically significant Chi-square test indicates that the two variables are associated (e.g. Psychology students are more likely to seek help than Business students). The effect size is assessed using effect size statistics: Phi and Cramer’s V .
In this example, a Chi-square test was conducted to assess whether males and females differ in their help-seeking behaviour (Yes/No). The crosstabulation table shows the percentage of males of females who sought/didn't seek help. The table 'Chi square tests' shows the significance of the test (Pearson Chi square asymp sig: .482). Since this value is above .05, we conclude that there is no statistically significant difference between males and females in their help-seeking behaviour.
Revision note.
What is a hypothesis test.
A hypothesis test is carried out at the 5% level of significance to test if a normal coin is fair or not.
Make sure you read the question carefully to determine whether the test you are carrying out is for a one-tailed or a two-tailed test.
How do we decide whether to reject or accept the null hypothesis.
For the following situations, state at the 1% and 5% significance levels whether the null hypothesis should be rejected or not.
How is a hypothesis test carried out.
A teacher carried out a hypothesis test at the 10% significance level to test if her students perform better in exams after using a new revision technique. Under the null hypothesis she calculates the probability that a value will be at least as extreme as the observed value to be 0.09142. Write a conclusion for her hypothesis test.
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Amber gained a first class degree in Mathematics & Meteorology from the University of Reading before training to become a teacher. She is passionate about teaching, having spent 8 years teaching GCSE and A Level Mathematics both in the UK and internationally. Amber loves creating bright and informative resources to help students reach their potential.
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Review about the permutation approach in hypothesis testing.
Bonnini, S.; Assegie, G.M.; Trzcinska, K. Review about the Permutation Approach in Hypothesis Testing. Mathematics 2024 , 12 , 2617. https://doi.org/10.3390/math12172617
Bonnini S, Assegie GM, Trzcinska K. Review about the Permutation Approach in Hypothesis Testing. Mathematics . 2024; 12(17):2617. https://doi.org/10.3390/math12172617
Bonnini, Stefano, Getnet Melak Assegie, and Kamila Trzcinska. 2024. "Review about the Permutation Approach in Hypothesis Testing" Mathematics 12, no. 17: 2617. https://doi.org/10.3390/math12172617
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Research output : Contribution to journal › Article › peer-review
Hybrid zone movement may result in substantial unidirectional introgression of selectively neutral material from the local to the advancing species, leaving a genetic footprint. This genetic footprint is represented by a trail of asymmetric tails and displaced cline centres in the wake of the moving hybrid zone. A peak of admixture linkage disequilibrium is predicted to exist ahead of the centre of the moving hybrid zone. We test these predictions of the movement hypothesis in a hybrid zone between common (Bufo bufo) and spined toads (B. spinosus), using 31 nuclear and one mtDNA SNPs along a transect in the northwest of France. Average effective selection in Bufo hybrids is low and clines vary in shape and centre. A weak pattern of asymmetric introgression is inferred from cline discordance of seven nuclear markers. The dominant direction of gene flow is from B. spinosus to B. bufo and is in support of southward movement of the hybrid zone. Conversely, a peak of admixture linkage disequilibrium north of the hybrid zone suggests northward movement. These contrasting results can be explained by reproductive isolation of the B. spinosus and B. bufo gene pools at the southern (B. spinosus) side of the hybrid zone. The joint occurrence of asymmetric introgression and admixture linkage disequilibrium can also be explained by the combination of low dispersal and random genetic drift due to low effective population sizes.
Original language | English |
---|---|
Pages (from-to) | 1070-1083 |
Number of pages | 14 |
Journal | |
Volume | 28 |
Issue number | 5 |
DOIs | |
Publication status | Published - 2019 Mar |
Externally published | Yes |
Free keywords.
T1 - Testing an hypothesis of hybrid zone movement for toads in France
AU - van Riemsdijk, Isolde
AU - Butlin, Roger K.
AU - Wielstra, Ben
AU - Arntzen, Jan W.
N1 - Publisher Copyright: © 2019 John Wiley & Sons Ltd
PY - 2019/3
Y1 - 2019/3
N2 - Hybrid zone movement may result in substantial unidirectional introgression of selectively neutral material from the local to the advancing species, leaving a genetic footprint. This genetic footprint is represented by a trail of asymmetric tails and displaced cline centres in the wake of the moving hybrid zone. A peak of admixture linkage disequilibrium is predicted to exist ahead of the centre of the moving hybrid zone. We test these predictions of the movement hypothesis in a hybrid zone between common (Bufo bufo) and spined toads (B. spinosus), using 31 nuclear and one mtDNA SNPs along a transect in the northwest of France. Average effective selection in Bufo hybrids is low and clines vary in shape and centre. A weak pattern of asymmetric introgression is inferred from cline discordance of seven nuclear markers. The dominant direction of gene flow is from B. spinosus to B. bufo and is in support of southward movement of the hybrid zone. Conversely, a peak of admixture linkage disequilibrium north of the hybrid zone suggests northward movement. These contrasting results can be explained by reproductive isolation of the B. spinosus and B. bufo gene pools at the southern (B. spinosus) side of the hybrid zone. The joint occurrence of asymmetric introgression and admixture linkage disequilibrium can also be explained by the combination of low dispersal and random genetic drift due to low effective population sizes.
AB - Hybrid zone movement may result in substantial unidirectional introgression of selectively neutral material from the local to the advancing species, leaving a genetic footprint. This genetic footprint is represented by a trail of asymmetric tails and displaced cline centres in the wake of the moving hybrid zone. A peak of admixture linkage disequilibrium is predicted to exist ahead of the centre of the moving hybrid zone. We test these predictions of the movement hypothesis in a hybrid zone between common (Bufo bufo) and spined toads (B. spinosus), using 31 nuclear and one mtDNA SNPs along a transect in the northwest of France. Average effective selection in Bufo hybrids is low and clines vary in shape and centre. A weak pattern of asymmetric introgression is inferred from cline discordance of seven nuclear markers. The dominant direction of gene flow is from B. spinosus to B. bufo and is in support of southward movement of the hybrid zone. Conversely, a peak of admixture linkage disequilibrium north of the hybrid zone suggests northward movement. These contrasting results can be explained by reproductive isolation of the B. spinosus and B. bufo gene pools at the southern (B. spinosus) side of the hybrid zone. The joint occurrence of asymmetric introgression and admixture linkage disequilibrium can also be explained by the combination of low dispersal and random genetic drift due to low effective population sizes.
KW - admixture linkage disequilibrium
KW - asymmetric reproductive isolation
KW - Bufo bufo
KW - Bufo spinosus
KW - cline coupling
KW - hybrid zone movement
U2 - 10.1111/mec.15005
DO - 10.1111/mec.15005
M3 - Article
C2 - 30609055
AN - SCOPUS:85063687723
SN - 0962-1083
JO - Molecular Ecology
JF - Molecular Ecology
COMMENTS
Table of contents. Step 1: State your null and alternate hypothesis. Step 2: Collect data. Step 3: Perform a statistical test. Step 4: Decide whether to reject or fail to reject your null hypothesis. Step 5: Present your findings. Other interesting articles. Frequently asked questions about hypothesis testing.
8.2 FOUR STEPS TO HYPOTHESIS TESTING The goal of hypothesis testing is to determine the likelihood that a population parameter, such as the mean, is likely to be true. In this section, we describe the four steps of hypothesis testing that were briefly introduced in Section 8.1: Step 1: State the hypotheses. Step 2: Set the criteria for a decision.
A hypothesis test consists of five steps: 1. State the hypotheses. State the null and alternative hypotheses. These two hypotheses need to be mutually exclusive, so if one is true then the other must be false. 2. Determine a significance level to use for the hypothesis. Decide on a significance level.
Important Notes on Hypothesis Testing. Hypothesis testing is a technique that is used to verify whether the results of an experiment are statistically significant. It involves the setting up of a null hypothesis and an alternate hypothesis.
Chapter 5 Hypothesis Testing. Chapter 5Hypothesis TestingA second type of statistical inf. rence is hypothesis testing. Here, rather than use ei-ther a point (or interval) estimate from a random sample to approximate a population parameter, hypothesis testing uses point estimate to decide which of two hypotheses (guesses.
Note the asymmetry between the null and alternative hypotheses. This asymmetry is due to the fact that we assume the null hypothesis, in a sense, and then see if there is sufficient evidence in \(\bs{x}\) to overturn this assumption in favor of the alternative. An hypothesis test is a statistical analogy to proof by contradiction, in a sense.
Alternative Hypothesis: The alternative hypothesis is a statement that suggests there is a statistically significant effect or difference in a given situation, opposing the null hypothesis. This hypothesis typically predicts the outcome researchers expect to find when conducting an experiment or analysis, playing a critical role in hypothesis testing by guiding the direction of research and ...
In binary hypothesis testing problems, we'll often be presented with two choices which we call hypotheses, and we'll have to decide whether to pick one or the other. The hypotheses are represented by H₀ and H₁ and are called null and alternate hypotheses respectively. In hypothesis testing, we either reject or accept the null hypothesis.
Hypothesis testing is a method of statistical inference that considers the null hypothesis H ₀ vs. the alternative hypothesis H a, where we are typically looking to assess evidence against H ₀. Such a test is used to compare data sets against one another, or compare a data set against some external standard. The former being a two sample ...
In reviewing hypothesis tests, we start first with the general idea. Then, we keep returning to the basic procedures of hypothesis testing, each time adding a little more detail. ... blood spots, hair samples, carpet fibers, shoe prints, ransom notes, and handwriting samples — with the hopes of finding "sufficient evidence" to make the ...
The intent of hypothesis testing is formally examine two opposing conjectures (hypotheses), H0 and HA. These two hypotheses are mutually exclusive and exhaustive so that one is true to the exclusion of the other. We accumulate evidence - collect and analyze sample information - for the purpose of determining which of the two hypotheses is true ...
This tests whether the population parameter is equal to, versus less than, some specific value. Ho: μ = 12 vs. H1: μ < 12. The critical region is in the left tail and the critical value is a negative value that defines the rejection zone. Figure 3.1.3 3.1. 3: The rejection zone for a left-sided hypothesis test.
A hypothesis test is carried out at the 5% level of significance to test if a normal coin is fair or not. (i) Describe what the population parameter could be for the hypothesis test. (ii) State whether the hypothesis test should be a one-tailed test or a two-tailed test, give a reason for your answer. (iii)
Steps in Hypothesis Testing: Book lists 9 - I use 5. You can see it is the same process. For each test we learn, we will see di erences in assumptions, formulas, etc., but the basic test setup is the same. We will learn about test statistics and p-values next week. Right now I want you to see where the hypothesis setup and choosing t in the ...
Effect size. Significance tests inform us about the likelihood of a meaningful difference between groups, but they don't always tell us the magnitude of that difference. Because any difference will become "significant" with an arbitrarily large sample, it's important to quantify the effect size that you observe.
o the sampling distribution un. r 0.The hypothesis testing recipeThe basic id. is:If the true parameter was 0...then T (Y) should look like it c. e from f(Y j 0).We compare the observed T (Y) to the sampling distribution under 0.If the observed T (Y) is unlik. ly under the sampling distribution given 0, we reject the null hy.
Plan for these notes I Describing a random variable I Expected value and variance I Probability density function I Normal distribution I Reading the table of the standard normal I Hypothesis testing on the mean I The basic intuition I Level of signi cance, p-value and power of a test I An example Michele Pi er (LSE)Hypothesis Testing for BeginnersAugust, 2011 3 / 53
9 Hypothesis Tests. (Ch 9.1-9.3, 9.5-9.9) Statistical hypothesis: a claim about the value of a parameter or population characteristic. Examples: H: μ = 75 cents, where μ is the true population average of daily per-student candy+soda expenses in US high schools. H: p < .10, where p is the population proportion of defective helmets for a given ...
If the biologist set her significance level \(\alpha\) at 0.05 and used the critical value approach to conduct her hypothesis test, she would reject the null hypothesis if her test statistic t* were less than -1.6939 (determined using statistical software or a t-table):s-3-3. Since the biologist's test statistic, t* = -4.60, is less than -1.6939, the biologist rejects the null hypothesis.
Case1: Population is normally or approximately normally distributed with known or unknown variance (sample size n may be small or large), Case 2: Population is not normal with known or unknown variance (n is large i.e. n≥30). 3.Hypothesis: we have three cases. Case I : H0: μ=μ0 HA: μ μ0. e.g. we want to test that the population mean is ...
The process of testing hypotheses follows a simple four-step procedure. This process will be what we use for the remained of the textbook and course, and though the hypothesis and statistics we use will change, this process will not. Step 1: State the Hypotheses Your hypotheses are the first thing you need to lay out. Otherwise, there is ...
Hypothesis testing is a statistical method used to determine if there is enough evidence in a sample data to draw conclusions about a population. It involves formulating two competing hypotheses, the null hypothesis (H0) and the alternative hypothesis (Ha), and then collecting data to assess the evidence. ...
Note: The p-value is the probability of obtaining a test statistic as extreme as, or more extreme than, the one observed in the sample, assuming the null hypothesis is true. To determine p-value for hypothesis testing, we typically refer to a statistical distribution table , such as the normal distribution or t-distribution tables based on.
The purpose of hypothesis testing is to test whether the null hypothesis (there is no difference, no effect) can be rejected or approved. If the null hypothesis is rejected, then the research hypothesis can be accepted. ... It is important to note that correlation analysis does not imply causality. Correlation is used to explore the association ...
A hypothesis test uses a sample of data in an experiment to test a statement made about the value of a population parameter. A hypothesis test is used when the value of the assumed population parameter is questioned. The hypothesis test will look at the which outcomes are unlikely to occur if assumed population parameter is true.
ii. Hypothesis testing is a procedure based on sample evidence and probability theory to decide whether the hypothesis is a reasonable statement. iii. We call a statement about the value of a population parameter a hypothesis. A. (i), (ii), and (iii) are all correct statements. B. (i) is a correct statement but not (ii) or (iii). C.
Today, permutation tests represent a powerful and increasingly widespread tool of statistical inference for hypothesis-testing problems. To the best of our knowledge, a review of the application of permutation tests for complex data in practical data analysis for hypothesis testing is missing. In particular, it is essential to review the application of permutation tests in two-sample or multi ...
A peak of admixture linkage disequilibrium is predicted to exist ahead of the centre of the moving hybrid zone. We test these predictions of the movement hypothesis in a hybrid zone between common (Bufo bufo) and spined toads (B. spinosus), using 31 nuclear and one mtDNA SNPs along a transect in the northwest of France.